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SCHEMA: Add file rule for phenotype tables #1672
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effigies
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schema
Issues related to the YAML schema representation of the specification. Patch version release.
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Dec 17, 2023
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## master #1672 +/- ##
==========================================
+ Coverage 87.92% 88.04% +0.11%
==========================================
Files 16 16
Lines 1375 1380 +5
==========================================
+ Hits 1209 1215 +6
+ Misses 166 165 -1 ☔ View full report in Codecov by Sentry. |
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SCHEMA: Add file rule hack for phenotype tables
SCHEMA: Add file rule for phenotype tables
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schema
Issues related to the YAML schema representation of the specification. Patch version release.
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This PR slightly amends how
stem
rules work, by making the stem a glob pattern and allowing it to coexist withdatatype
. This hacks 'phenotype' into thedatatype
structure; in the absence of entities, it works correctly for now.I don't know that this is a long-term solution, but it seems good enough for now with minimal changes required to the schematools or the JS schema validator.
This is intended to be compatible with, but not actually dependent on #1693.